species:   Rhsol
pid:       PID0490
parent:    Rhi-milR-163
paralog:   
locus:     KB317708.1:388298-388375
matures:   ['UUGACCAUGGAGACUGCUUGUG', 'AUGAAGGAGAUCUUCUGGUUGAGG']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317708.1:388298-388375

15 out of bounds
5 alignments
4 proper strand
4 stranded perfect matches

        *************************       ***************************           
CUAGAAGCAGUUGACCAUGGAGACUGCUUGUGCUAGCUAAGUUAUGAAGGAGAUCUUCUGGUUGAGGGAGUUUGGCAU
(((((..(..(((((((.(((((((.(((..(((.....)))....))).)).))))))))))))..)..)))))...
----------UUGACCAUGGAGACUGCUUGUG---------------------------------------------- l=22 a=1 c
-------------------------------------------AUGAAGGAGAUCUUCUGGUUGAGG----------- l=24 a=0 c*
----------UUGACCAUGGAGACUGCUUGUGC--------------------------------------------- l=23 a=2 ma
------------------------------------------UAUGAAGGAGAUCUUCUGGUUGAGG----------- l=25 a=0 ma*

----------UUGACCAUGGAGACUGCUUG------------------------------------------------ l=20 a=1 
----------UUGACCAUGGAGACUGCUUGUG---------------------------------------------- l=22 a=1 (c)
----------UUGACCAUGGAGACUGCUUGUGC--------------------------------------------- l=23 a=2 (ma)

mb-01011
ax-1011011
ku-01
ss-111110101110
fn-001
